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ydbD DUF2773 domain-containing protein YdbD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945983, updated on 3-Dec-2024

Summary

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Official Symbol
ydbD
Official Full Name
DUF2773 domain-containing protein YdbD
Primary source
ECOCYC:EG11310
Locus tag
b1407
See related
ASAP:ABE-0004701
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1400
Summary
YdbD may play a role in detoxification of methylglyoxal (MG) and dihydroxyacetone (DHA). [More information is available at EcoCyc: EG11310].
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Genomic context

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Sequence:
NC_000913.3 (1475144..1477450)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene IS30 family transposase Neighboring gene pyridoxal reductase Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene hydrolase/methyltransferase domain-containing protein YnbC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Screening of genes related to methylglyoxal susceptibility. Kim I, et al. J Microbiol, 2007 Aug. PMID 17846588
  2. Multiple IS insertion sequences near the replication terminus in Escherichia coli K-12. Moszer I, et al. Biochimie, 1991 Nov. PMID 1665988
  3. New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide. Justino MC, et al. J Biol Chem, 2005 Jan 28. PMID 15546870
  4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to methylglyoxal EXP
Inferred from Experiment
more info
 PubMed 

General protein information

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Preferred Names
DUF2773 domain-containing protein YdbD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1475144..1477450
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415925.2 DUF2773 domain-containing protein YdbD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415925.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAI9ME17
    Conserved Domains (2) summary
    pfam10971
    Location:688 → 768
    DUF2773; Protein of unknown function (DUF2773)
    pfam04519
    Location:75 → 164
    Bactofilin; Polymer-forming cytoskeletal
Nucleotide Protein
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