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ynbD phosphatase domain-containing protein YnbD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945985, updated on 17-Dec-2024

Summary

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Official Symbol
ynbD
Official Full Name
phosphatase domain-containing protein YnbD
Primary source
ECOCYC:G6730
Locus tag
b1411
See related
ASAP:ABE-0004710
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1404
Summary
[More information is available at EcoGene: EG13751].
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Genomic context

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Sequence:
NC_000913.3 (1480909..1482201)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene CDP-alcohol phosphatidyltransferase domain-containing protein YnbA Neighboring gene putative CDP-diglyceride synthase Neighboring gene hydrolase/methyltransferase domain-containing protein YnbC Neighboring gene FMN dependent NADH:quinone oxidoreductase Neighboring gene ATP-dependent 3'->5' RNA helicase HrpA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
  2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phosphatase domain-containing protein YnbD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1480909..1482201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415929.1 phosphatase domain-containing protein YnbD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415929.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0F3SIA4, A0A1X1LVX7
    Conserved Domains (2) summary
    cd03386
    Location:47 → 197
    PAP2_Aur1_like; PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.
    cd14527
    Location:295 → 429
    DSP_bac; unknown subfamily of bacterial and plant dual specificity protein phosphatases
Nucleotide Protein
Heading Accession and Version

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