U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ydfO DUF1398 domain-containing protein YdfO [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945992, updated on 17-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
ydfO
Official Full Name
DUF1398 domain-containing protein YdfO
Primary source
ECOCYC:G6822
Locus tag
b1549
See related
ASAP:ABE-0005175
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1543
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (1637047..1637457)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative prophage side tail fiber protein StfQ Neighboring gene putative prophage DNA-packaging protein NohA Neighboring gene DUF3950 domain-containing protein YnfO Neighboring gene protein GnsB Neighboring gene protein YnfN

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  2. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  3. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  4. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
DUF1398 domain-containing protein YdfO

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1637047..1637457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416067.2 DUF1398 domain-containing protein YdfO [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416067.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A830SCR0
    Conserved Domains (1) summary
    COG5562
    Location:1 → 134
    YbcV; Prophage-encoded protein YbcV, DUF1398 family [Mobilome: prophages, transposons]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.