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opgD glucans biosynthesis protein D [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 945994, updated on 17-Dec-2024

Summary

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Official Symbol
opgD
Official Full Name
glucans biosynthesis protein D
Primary source
ECOCYC:EG12859
Locus tag
b1424
See related
ASAP:ABE-0004754
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1418; mdoD; ydcG; yzzZ
Summary
The opg genes were originally called mdo because the osmoregulated periplasmic glucans (OPGs) were originally called membrane-derived oligosaccharides. [More information is available at EcoGene: EG12859]. The mdoD gene (encoding the OpgD protein) was identified in silico as a paralog of mdoG . [More information is available at EcoCyc: EG12859].
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Genomic context

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Sequence:
NC_000913.3 (1496856..1498511)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator YdcI Neighboring gene DUF1338 domain-containing protein YdcJ Neighboring gene DUF465 domain-containing protein YdcH Neighboring gene ribosomal-protein-L12-serine N-acetyltransferase Neighboring gene putative acyltransferase YdcK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and molecular characterization of the gene rimL which encodes an enzyme acetylating ribosomal protein L12 of Escherichia coli K12. Tanaka S, et al. Mol Gen Genet, 1989 Jun. PMID 2671655
  2. Identification of mdoD, an mdoG paralog which encodes a twin-arginine-dependent periplasmic protein that controls osmoregulated periplasmic glucan backbone structures. Lequette Y, et al. J Bacteriol, 2004 Jun. PMID 15175282, Free PMC Article
  3. Pathfinders and trailblazers: a prokaryotic targeting system for transport of folded proteins. Sargent F, et al. FEMS Microbiol Lett, 2006 Jan. PMID 16445746
  4. Protein targeting by the bacterial twin-arginine translocation (Tat) pathway. Berks BC, et al. Curr Opin Microbiol, 2005 Apr. PMID 15802249
  5. The Tat protein translocation pathway and its role in microbial physiology. Berks BC, et al. Adv Microb Physiol, 2003. PMID 14560665

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

General gene information

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Homology

General protein information

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Preferred Names
glucans biosynthesis protein D

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1496856..1498511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415941.5 glucans biosynthesis protein D [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415941.5

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8NGR8
    Conserved Domains (1) summary
    COG3131
    Location:1 → 542
    MdoG; Periplasmic glucans biosynthesis protein [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
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