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ydcR fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946004, updated on 3-Dec-2024

Summary

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Official Symbol
ydcR
Official Full Name
fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR
Primary source
ECOCYC:G6750
Locus tag
b1439
See related
ASAP:ABE-0004800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1433
Summary
AFMB Structural Genomics target Number 59 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13761]. YdcR is a member of the GntR family of transcriptional regulators. [More information is available at EcoCyc: G6750].
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Genomic context

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Sequence:
NC_000913.3 (1510003..1511409)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene mRNA interferase toxin HicA Neighboring gene antitoxin of the HicA-HicB toxin-antitoxin system/ DNA-binding transcriptional repressor HicB Neighboring gene putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase Neighboring gene putative ABC transporter ATP-binding protein YdcT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  2. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables transaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transaminase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in alpha-amino acid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1510003..1511409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415956.1 fused putative DNA-binding transcriptional regulator/putative aminotransferase YdcR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415956.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376X234, E1CBR1
    Conserved Domains (1) summary
    COG1167
    Location:1 → 468
    ARO8; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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