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ydcZ putative inner membrane protein YdcZ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946008, updated on 3-Dec-2024

Summary

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Official Symbol
ydcZ
Official Full Name
putative inner membrane protein YdcZ
Primary source
ECOCYC:G6758
Locus tag
b1447
See related
ASAP:ABE-0004823
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1441
Summary
YdcZ is an inner membrane protein with five predicted transmembrane domains. [More information is available at EcoCyc: G6758].
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Genomic context

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Sequence:
NC_000913.3 (1517882..1518331, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene orphan toxin OrtT Neighboring gene DUF2526 domain-containing protein YdcY Neighboring gene L-amino acid N-acyltransferase Neighboring gene NADPH-dependent curcumin/dihydrocurcumin reductase Neighboring gene DNA-binding transcriptional dual regulator McbR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli. Jindal S, et al. BMC Microbiol, 2019 Aug 22. PMID 31438868, Free PMC Article
  2. Evolution of antiparallel two-domain membrane proteins: tracing multiple gene duplication events in the DUF606 family. Lolkema JS, et al. J Mol Biol, 2008 May 2. PMID 18384811
  3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  5. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in inorganic cation import across plasma membrane IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative inner membrane protein YdcZ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1517882..1518331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415964.1 putative inner membrane protein YdcZ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415964.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A377CV25
    Conserved Domains (1) summary
    COG3238
    Location:1 → 149
    ydcZ; Uncharacterized membrane protein YdcZ, DUF606 family [Function unknown]
Nucleotide Protein
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