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yqcC DUF446 domain-containing protein YqcC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946027, updated on 17-Dec-2024

Summary

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Official Symbol
yqcC
Official Full Name
DUF446 domain-containing protein YqcC
Primary source
ECOCYC:G7450
Locus tag
b2792
See related
ASAP:ABE-0009152
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2786
Summary
Transcription of yqcC is induced upon biofilm formation compared to planktonic growth in both exponential and stationary phase. [More information is available at EcoCyc: G7450].
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Genomic context

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Sequence:
NC_000913.3 (2923784..2924113, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene galactarate/D-glucarate transporter GudP Neighboring gene putative flavodoxin YqcA Neighboring gene tRNA pseudouridine(65) synthase Neighboring gene ncRNA Neighboring gene SecY-interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DUF446 domain-containing protein YqcC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2923784..2924113 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417272.1 DUF446 domain-containing protein YqcC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417272.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376WWQ2
    Conserved Domains (1) summary
    COG3098
    Location:1 → 109
    YqcC; Uncharacterized conserved protein YqcC, DUF446 family [Function unknown]
Nucleotide Protein
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