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bdm biofilm-dependent modulation protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946041, updated on 3-Dec-2024

Summary

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Official Symbol
bdm
Official Full Name
biofilm-dependent modulation protein
Primary source
ECOCYC:G6776
Locus tag
b1481
See related
ASAP:ABE-0004938
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1475; yddX
Summary
The yddX gene is renamed bdm and the site of the MudX insertion is between the T and the G of the re-annotated ATG start codon, personal communication, Philippe Lejeune, INSA, France, Oct. [More information is available at EcoGene: EG14301]. bdm is a member of the Rcs regulon . [More information is available at EcoCyc: G6776].
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Genomic context

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Sequence:
NC_000913.3 (1556065..1556280, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase (oxaloacetate-decarboxylating) Neighboring gene ribosome-associated protein Sra Neighboring gene osmotically inducible peroxiredoxin OsmC Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional role of bdm during flagella biogenesis in Escherichia coli. Kim JS, et al. Curr Microbiol, 2015 Mar. PMID 25398323
  2. Bdm-Mediated Regulation of Flagellar Biogenesis in Escherichia coli and Salmonella enterica Serovar Typhimurium. Lee J, et al. Curr Microbiol, 2017 Sep. PMID 28603807
  3. Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Sim SH, et al. Mol Microbiol, 2010 Jan. PMID 19943899
  4. Osmotic regulation of the Escherichia coli bdm (biofilm-dependent modulation) gene by the RcsCDB His-Asp phosphorelay. Francez-Charlot A, et al. J Bacteriol, 2005 Jun. PMID 15901715, Free PMC Article
  5. Profiling early osmostress-dependent gene expression in Escherichia coli using DNA macroarrays. Weber A, et al. J Bacteriol, 2002 Oct. PMID 12218039, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of bacterial-type flagellum assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
biofilm-dependent modulation protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1556065..1556280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415998.4 biofilm-dependent modulation protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415998.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1MTX2
    Conserved Domains (1) summary
    PRK11436
    Location:1 → 71
    PRK11436; biofilm-dependent modulation protein; Provisional
Nucleotide Protein
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