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ydfR protein YdfR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946095, updated on 3-Dec-2024

Summary

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Official Symbol
ydfR
Official Full Name
protein YdfR
Primary source
ECOCYC:G6828
Locus tag
b1555
See related
ASAP:ABE-0005192
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1549
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Genomic context

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Sequence:
NC_000913.3 (1640054..1640365, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene cold shock-like protein CspI Neighboring gene DUF2514 domain-containing protein RzpQ Neighboring gene putative lipoprotein RzoQ Neighboring gene putative lysozyme Neighboring gene putative prophage lysis protein EssQ Neighboring gene putative zinc-binding protein YnfU

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  2. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
protein YdfR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1640054..1640365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416073.1 protein YdfR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416073.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3L5GYJ2
    Conserved Domains (1) summary
    pfam07041
    Location:1 → 93
    DUF1327; Protein of unknown function (DUF1327)
Nucleotide Protein
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