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ynfB DUF1283 domain-containing protein YnfB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946119, updated on 3-Dec-2024

Summary

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Official Symbol
ynfB
Official Full Name
DUF1283 domain-containing protein YnfB
Primary source
ECOCYC:G6841
Locus tag
b1583
See related
ASAP:ABE-0005284
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1578
Summary
First 28 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG13840].
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Genomic context

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Sequence:
NC_000913.3 (1655808..1656149)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene mandelate racemase/muconate lactonizing enzyme family protein RspA Neighboring gene putative transporter YnfA Neighboring gene spermidine N-acetyltransferase Neighboring gene PF06788 family lipoprotein YnfC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
  2. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532
  3. Interaction network containing conserved and essential protein complexes in Escherichia coli. Butland G, et al. Nature, 2005 Feb 3. PMID 15690043
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cell outer membrane HTP PubMed 
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DUF1283 domain-containing protein YnfB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1655808..1656149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416100.1 DUF1283 domain-containing protein YnfB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416100.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7HSQ7
    Conserved Domains (1) summary
    PRK13659
    Location:11 → 113
    PRK13659; DUF1283 family protein
Nucleotide Protein
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