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rsxD SoxR [2Fe-2S] reducing system protein RsxD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946134, updated on 3-Dec-2024

Summary

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Official Symbol
rsxD
Official Full Name
SoxR [2Fe-2S] reducing system protein RsxD
Primary source
ECOCYC:G6874
Locus tag
b1630
See related
ASAP:ABE-0005457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1626; ydgO
Summary
RsxD is predicted to span the membrane greater than six times . [More information is available at EcoCyc: G6874].
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Genomic context

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Sequence:
NC_000913.3 (1709142..1710200)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene SoxR [2Fe-2S] reducing system protein RsxA Neighboring gene SoxR [2Fe-2S] reducing system protein RsxB Neighboring gene SoxR [2Fe-2S] reducing system protein RsxC Neighboring gene SoxR [2Fe-2S] reducing system protein RsxG Neighboring gene SoxR [2Fe-2S] reducing system protein RsxE Neighboring gene endonuclease III

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Covalent binding of flavins to RnfG and RnfD in the Rnf complex from Vibrio cholerae. Backiel J, et al. Biochemistry, 2008 Oct 28. PMID 18831535, Free PMC Article
  2. FMN is covalently attached to a threonine residue in the NqrB and NqrC subunits of Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus. Hayashi M, et al. FEBS Lett, 2001 Jan 12. PMID 11163785
  3. Characterization of components of a reducing system for SoxR in the cytoplasmic membrane of Escherichia coli. Lee KL, et al. J Microbiol, 2022 Apr. PMID 35344189
  4. Covalent attachment of flavin adenine dinucleotide (FAD) and flavin mononucleotide (FMN) to enzymes: the current state of affairs. Mewies M, et al. Protein Sci, 1998 Jan. PMID 9514256, Free PMC Article
  5. The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons. Gifford CM, et al. Nucleic Acids Res, 2000 Feb 1. PMID 10637328, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables oxidoreductase activity, acting on NAD(P)H IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in electron transport chain IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of oxidoreductase complex IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
part_of plasma membrane protein complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SoxR [2Fe-2S] reducing system protein RsxD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1709142..1710200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416147.1 SoxR [2Fe-2S] reducing system protein RsxD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416147.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376WY52
    Conserved Domains (1) summary
    PRK00816
    Location:2 → 351
    rnfD; electron transport complex protein RnfD; Reviewed
Nucleotide Protein
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