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ydgK DUF2569 domain-containing inner membrane protein YdgK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946154, updated on 3-Dec-2024

Summary

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Official Symbol
ydgK
Official Full Name
DUF2569 domain-containing inner membrane protein YdgK
Primary source
ECOCYC:G6870
Locus tag
b1626
See related
ASAP:ABE-0005447
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1622; rsxP
Summary
ydgK transcripts readthrough into the rsxABCDGEnth operon (Gifford, 2000). [More information is available at EcoGene: EG13932]. YdgK is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G6870].
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Genomic context

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Sequence:
NC_000913.3 (1705250..1705690)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene beta-lactam resistance protein Neighboring gene H-NS- and StpA-binding protein Neighboring gene SoxR [2Fe-2S] reducing system protein RsxA Neighboring gene SoxR [2Fe-2S] reducing system protein RsxB Neighboring gene SoxR [2Fe-2S] reducing system protein RsxC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons. Gifford CM, et al. Nucleic Acids Res, 2000 Feb 1. PMID 10637328, Free PMC Article
  2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  4. A reducing system of the superoxide sensor SoxR in Escherichia coli. Koo MS, et al. EMBO J, 2003 Jun 2. PMID 12773378, Free PMC Article
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF2569 domain-containing inner membrane protein YdgK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1705250..1705690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416143.2 DUF2569 domain-containing inner membrane protein YdgK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416143.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9AIL0
    Conserved Domains (1) summary
    pfam10754
    Location:7 → 144
    DUF2569; Protein of unknown function (DUF2569)
Nucleotide Protein
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