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ydgA DUF945 domain-containing protein YdgA [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946172, updated on 17-Dec-2024

Summary

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Official Symbol
ydgA
Official Full Name
DUF945 domain-containing protein YdgA
Primary source
ECOCYC:G6865
Locus tag
b1614
See related
ASAP:ABE-0005402
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1609
Summary
HT_Cmplx48_Mem: [More information is available at EcoGene: EG12457]. YdgA has been found as a dimeric complex tethered to the inner membrane . [More information is available at EcoCyc: G6865].
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Genomic context

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Sequence:
NC_000913.3 (1689852..1691360)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene fumarase A Neighboring gene mannose-6-phosphate isomerase Neighboring gene outer membrane porin family protein UidC Neighboring gene glucuronide:H(+) symporter Neighboring gene beta-glucuronidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of beryllium-induced genotoxicity in an Escherichia coli mutant model system. Taylor-McCabe KJ, et al. Proteomics, 2006 Mar. PMID 16447159
  2. Systematic identification of the subproteome of Escherichia coli cell envelope reveals the interaction network of membrane proteins and membrane-associated peripheral proteins. Huang CZ, et al. J Proteome Res, 2006 Dec. PMID 17137328
  3. Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. Kolker E, et al. Nucleic Acids Res, 2004. PMID 15121896, Free PMC Article
  4. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  5. A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Lasserre JP, et al. Electrophoresis, 2006 Aug. PMID 16858726

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF945 domain-containing protein YdgA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1689852..1691360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416131.1 DUF945 domain-containing protein YdgA [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416131.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TZQ2
    Conserved Domains (1) summary
    COG5339
    Location:3 → 491
    YdgA; Uncharacterized conserved protein YdgA, DUF945 family [Function unknown]
Nucleotide Protein
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