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nlpC NlpC/P60 family lipoprotein NlpC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946220, updated on 3-Dec-2024

Summary

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Official Symbol
nlpC
Official Full Name
NlpC/P60 family lipoprotein NlpC
Primary source
ECOCYC:EG11133
Locus tag
b1708
See related
ASAP:ABE-0005704
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1706
Summary
First 15 aa are a type II signal peptide. spr, nlpC, yafL and ydhO are paralogs. [More information is available at EcoGene: EG11133]. The NlpC lipoprotein of Escherichia coli exhibits high sequence similarity to the p60 proteins of Listeria species and to CwlF of Bacillus subtilis . [More information is available at EcoCyc: EG11133].
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Genomic context

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Sequence:
NC_000913.3 (1792267..1792731, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein adenylyltransferase SelO Neighboring gene anti-FlhDC factor RflP Neighboring gene vitamin B12 ABC transporter ATP binding subunit Neighboring gene thioredoxin/glutathione peroxidase BtuE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Regulation of a new cell wall hydrolase gene, cwlF, which affects cell separation in Bacillus subtilis. Ishikawa S, et al. J Bacteriol, 1998 May. PMID 9573210, Free PMC Article
  2. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  3. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  4. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
  5. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in peptidoglycan turnover IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NlpC/P60 family lipoprotein NlpC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1792267..1792731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416223.1 NlpC/P60 family lipoprotein NlpC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416223.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A444R0S0
    Conserved Domains (1) summary
    PRK10838
    Location:40 → 154
    spr; bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase
Nucleotide Protein
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