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ygjH putative tRNA-binding protein YgjH [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946251, updated on 3-Dec-2024

Summary

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Official Symbol
ygjH
Official Full Name
putative tRNA-binding protein YgjH
Primary source
ECOCYC:G7597
Locus tag
b3074
See related
ASAP:ABE-0010094
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3064
Summary
YgjH is homologous to the methionyl tRNA synthase dimerization appendix. [More information is available at EcoGene: EG12719].
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Genomic context

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Sequence:
NC_000913.3 (3220915..3221247, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene aerotaxis receptor Neighboring gene putrescine aminotransferase Neighboring gene DNA-binding transcriptional repressor EbgR Neighboring gene evolved beta-D-galactosidase subunit alpha Neighboring gene DUF386 domain-containing evolved beta-D-galactosidase subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystal structure of trbp111: a structure-specific tRNA-binding protein. Swairjo MA, et al. EMBO J, 2000 Dec 1. PMID 11101501, Free PMC Article
  2. Effects of pre-protein overexpression on SecB synthesis in Escherichia coli. Müller JP. FEMS Microbiol Lett, 1999 Jul 1. PMID 10418149
  3. Identification of Attenuators of Transcriptional Termination: Implications for RNA Regulation in Escherichia coli. Morita T, et al. mBio, 2022 Dec 20. PMID 36226957, Free PMC Article
  4. Gene targeting using randomly inserted group II introns (targetrons) recovered from an Escherichia coli gene disruption library. Yao J, et al. Nucleic Acids Res, 2005. PMID 15947133, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Identification of Attenuators of Transcriptional Termination: Implications for RNA Regulation in Escherichia coli.
    Title: Identification of Attenuators of Transcriptional Termination: Implications for RNA Regulation in Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative tRNA-binding protein YgjH

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3220915..3221247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417545.1 putative tRNA-binding protein YgjH [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417545.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7F6B0
    Conserved Domains (1) summary
    PRK10089
    Location:1 → 110
    PRK10089; chaperone CsaA
Nucleotide Protein
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