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rsmF 16S rRNA m(5)C1407 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946348, updated on 3-Dec-2024

Summary

Official Symbol
rsmF
Official Full Name
16S rRNA m(5)C1407 methyltransferase
Primary source
ECOCYC:G7008
Locus tag
b1835
See related
ASAP:ABE-0006106
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1834; yebU
Summary
RsmF is the methyltransferase responsible for methylation of 16S rRNA at the C5 position of the C1407 nucleotide. [More information is available at EcoCyc: G7008].
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Genomic context

Sequence:
NC_000913.3 (1920223..1921662)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene free methionine-(R)-sulfoxide reductase Neighboring gene intermembrane transport protein LetA Neighboring gene lipophilic envelope spanning tunnel Neighboring gene DUF1480 domain-containing protein YebV Neighboring gene DUF1482 domain-containing protein YebW

General gene information

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables rRNA (cytosine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables rRNA (cytosine-C5-)-methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables rRNA (cytosine-C5-)-methyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables rRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
 
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 
involved_in rRNA base methylation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within rRNA base methylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
16S rRNA m(5)C1407 methyltransferase
NP_416349.2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1920223..1921662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416349.2 16S rRNA m(5)C1407 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416349.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7IDD4
    Conserved Domains (1) summary
    PRK11933
    Location:6474
    yebU; rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed