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yoaB RutC family protein YoaB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946357, updated on 17-Dec-2024

Summary

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Official Symbol
yoaB
Official Full Name
RutC family protein YoaB
Primary source
ECOCYC:G6993
Locus tag
b1809
See related
ASAP:ABE-0006020
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1807
Summary
YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. [More information is available at EcoGene: EG13514]. Transcription of yoaB is induced upon biofilm formation compared to planktonic growth in exponential phase. [More information is available at EcoCyc: G6993].
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Genomic context

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Sequence:
NC_000913.3 (1893367..1893711)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene N(6)-L-threonylcarbamoyladenine synthase, TsaB subunit Neighboring gene putative ATP-dependent 5' to 3' DNA helicase Neighboring gene DUF1889 domain-containing protein YoaC Neighboring gene UFP0181 family protein YoaH

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Global impact of mature biofilm lifestyle on Escherichia coli K-12 gene expression. Beloin C, et al. Mol Microbiol, 2004 Feb. PMID 14731270
  2. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RutC family protein YoaB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1893367..1893711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416323.4 RutC family protein YoaB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416323.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9B448
    Conserved Domains (1) summary
    cd06150
    Location:10 → 113
    YjgF_YER057c_UK114_like_2; This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence ...
Nucleotide Protein
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