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yebF secreted protein YebF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946363, updated on 3-Dec-2024

Summary

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Official Symbol
yebF
Official Full Name
secreted protein YebF
Primary source
ECOCYC:EG11807
Locus tag
b1847
See related
ASAP:ABE-0006141
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1848
Summary
YebF is secreted into the periplasm normally, then exported into the medium by an unknown mechanism. [More information is available at EcoGene: EG11807]. YebF is a secreted protein of unknown function. [More information is available at EcoCyc: EG11807].
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Genomic context

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Sequence:
NC_000913.3 (1930034..1930390, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene exonuclease X Neighboring gene oligopeptidase B Neighboring gene DUF533 domain-containing inner membrane protein YebE Neighboring gene DNA damage-inducible protein YebG Neighboring gene phosphoribosylglycinamide formyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The disulphide isomerase DsbC cooperates with the oxidase DsbA in a DsbD-independent manner. Vertommen D, et al. Mol Microbiol, 2008 Jan. PMID 18036138, Free PMC Article
  2. Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Leichert LI, et al. Proc Natl Acad Sci U S A, 2008 Jun 17. PMID 18287020, Free PMC Article
  3. Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli. Zhang G, et al. Nat Biotechnol, 2006 Jan. PMID 16369539
  4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Extracellular accumulation of recombinant proteins fused to the carrier protein YebF in Escherichia coli.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secreted protein YebF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1930034..1930390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416361.2 secreted protein YebF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416361.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A6YRS4
    Conserved Domains (1) summary
    PRK13680
    Location:2 → 118
    PRK13680; hypothetical protein; Provisional
Nucleotide Protein
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Gene LinkOut

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