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yebG DNA damage-inducible protein YebG [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946364, updated on 3-Dec-2024

Summary

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Official Symbol
yebG
Official Full Name
DNA damage-inducible protein YebG
Primary source
ECOCYC:EG11808
Locus tag
b1848
See related
ASAP:ABE-0006145
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1849
Summary
The yebG gene is a DNA damage-inducible gene of the SOS regulon . [More information is available at EcoCyc: EG11808].
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Genomic context

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Sequence:
NC_000913.3 (1930457..1930747, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF533 domain-containing inner membrane protein YebE Neighboring gene secreted protein YebF Neighboring gene phosphoribosylglycinamide formyltransferase 2 Neighboring gene KHG/KDPG aldolase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of yebG as a DNA damage-inducible Escherichia coli gene. Lomba MR, et al. FEMS Microbiol Lett, 1997 Nov 1. PMID 9368369
  2. A genomic approach to gene fusion technology. Van Dyk TK, et al. Proc Natl Acad Sci U S A, 2001 Feb 27. PMID 11226277, Free PMC Article
  3. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. Faith JJ, et al. PLoS Biol, 2007 Jan. PMID 17214507, Free PMC Article
  4. Evaluation of thresholds for the detection of binding sites for regulatory proteins in Escherichia coli K12 DNA. Benítez-Bellón E, et al. Genome Biol, 2002. PMID 11897025, Free PMC Article
  5. Reconstructing repressor protein levels from expression of gene targets in Escherichia coli. Khanin R, et al. Proc Natl Acad Sci U S A, 2006 Dec 5. PMID 17121995, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within SOS response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to X-ray IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DNA damage-inducible protein YebG

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1930457..1930747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416362.1 DNA damage-inducible protein YebG [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416362.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376S8G2
    Conserved Domains (1) summary
    PRK10061
    Location:1 → 96
    PRK10061; DNA damage-inducible protein YebG; Provisional
Nucleotide Protein
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