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ygiZ DUF2645 domain-containing inner membrane protein YgiZ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946450, updated on 17-Dec-2024

Summary

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Official Symbol
ygiZ
Official Full Name
DUF2645 domain-containing inner membrane protein YgiZ
Primary source
ECOCYC:G7577
Locus tag
b3027
See related
ASAP:ABE-0009940
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3018
Summary
YgiZ is an inner membrane protein with three predicted transmembrane domains. [More information is available at EcoCyc: G7577].
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Genomic context

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Sequence:
NC_000913.3 (3171879..3172211, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene BOF family protein YgiW Neighboring gene DNA-binding transcriptional activator QseB Neighboring gene sensor histidine kinase QseC Neighboring gene NADPH:quinone oxidoreductase MdaB Neighboring gene putative quinol monooxygenase YgiN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
  2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF2645 domain-containing inner membrane protein YgiZ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3171879..3172211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417499.1 DUF2645 domain-containing inner membrane protein YgiZ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417499.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FWJ0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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