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yadE putative polysaccharide deacetylase lipoprotein YadE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946536, updated on 3-Dec-2024

Summary

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Official Symbol
yadE
Official Full Name
putative polysaccharide deacetylase lipoprotein YadE
Primary source
ECOCYC:EG11749
Locus tag
b0130
See related
ASAP:ABE-0000457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0129
Summary
YadE has a predicted 19 aa signal peptide.Paralogous to pgaB. [More information is available at EcoGene: EG11749]. YadE is a hypothetical protein. [More information is available at EcoCyc: EG11749].
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Genomic context

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Sequence:
NC_000913.3 (145081..146310)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter ATP-binding protein YadG Neighboring gene putative ABC transporter membrane subunit YadH Neighboring gene putative PTS enzyme IIA component YadI Neighboring gene aspartate 1-decarboxylase proenzyme Neighboring gene recombination-promoting nuclease RpnC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  2. Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region. Fujita N, et al. Nucleic Acids Res, 1994 May 11. PMID 8202364, Free PMC Article
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative polysaccharide deacetylase lipoprotein YadE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    145081..146310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414672.1 putative polysaccharide deacetylase lipoprotein YadE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414672.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S7E870
    Conserved Domains (1) summary
    cd10966
    Location:230 → 399
    CE4_yadE_5s; Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins
Nucleotide Protein
Heading Accession and Version

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