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trhP tRNA wobble base hydroxylation protein TrhP [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946609, updated on 3-Dec-2024

Summary

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Official Symbol
trhP
Official Full Name
tRNA wobble base hydroxylation protein TrhP
Primary source
ECOCYC:G7118
Locus tag
b2081
See related
ASAP:ABE-0006891
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2077; yegQ
Summary
AFMB Structural Genomics target Number 18 (http://afmb.cnrs-mrs.fr/article171.html). ydcP, yegQ, yhbU, and yhbV are paralogs. [More information is available at EcoGene: EG14060].
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Genomic context

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Sequence:
NC_000913.3 (2165668..2167029)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene sensor histidine kinase BaeS Neighboring gene DNA-binding transcriptional activator BaeR Neighboring gene DUF1508 domain-containing protein YegP Neighboring gene ncRNA Neighboring gene prophage P2 late control protein OgrK

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
  2. A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map. Itoh T, et al. DNA Res, 1996 Dec 31. PMID 9097040
  3. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
  4. Dual pathways of tRNA hydroxylation ensure efficient translation by expanding decoding capability. Sakai Y, et al. Nat Commun, 2019 Jun 28. PMID 31253794, Free PMC Article
  5. Identification and Characterization of Genes Required for 5-Hydroxyuridine Synthesis in Bacillus subtilis and Escherichia coli tRNA. Lauhon CT. J Bacteriol, 2019 Oct 15. PMID 31358606, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA modification IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA wobble uridine modification IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
tRNA wobble base hydroxylation protein TrhP

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2165668..2167029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416585.1 tRNA wobble base hydroxylation protein TrhP [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416585.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6C9QBN0
    Conserved Domains (1) summary
    PRK15452
    Location:1 → 443
    PRK15452; putative protease; Provisional
Nucleotide Protein
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