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yohD DedA family protein YohD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946661, updated on 3-Dec-2024

Summary

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Official Symbol
yohD
Official Full Name
DedA family protein YohD
Primary source
ECOCYC:EG12017
Locus tag
b2136
See related
ASAP:ABE-0007059
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2129
Summary
YohD is a member of the DedA family of inner membrane proteins . [More information is available at EcoCyc: EG12017].
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Genomic context

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Sequence:
NC_000913.3 (2225801..2226379)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptidoglycan DD-endopeptidase PbpG Neighboring gene putative inner membrane protein Neighboring gene putative oxidoreductase YohF Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Temperature sensitivity and cell division defects in an Escherichia coli strain with mutations in yghB and yqjA, encoding related and conserved inner membrane proteins. Thompkins K, et al. J Bacteriol, 2008 Jul. PMID 18456815, Free PMC Article
  2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within FtsZ-dependent cytokinesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DedA family protein YohD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2225801..2226379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416640.2 DedA family protein YohD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416640.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8H9XMP0
    Conserved Domains (1) summary
    COG0586
    Location:1 → 189
    DedA; Uncharacterized membrane protein DedA, SNARE-associated domain [Function unknown]
Nucleotide Protein
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