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yfaZ putative porin YfaZ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946739, updated on 17-Dec-2024

Summary

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Official Symbol
yfaZ
Official Full Name
putative porin YfaZ
Primary source
ECOCYC:G7163
Locus tag
b2250
See related
ASAP:ABE-0007445
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2243
Summary
Predicted 21 aa signal peptide is consistent with an observed secB-dependent precursor cleavage that is blocked by azide (Marani, 2006). [More information is available at EcoGene: EG14088]. YfaZ localizes to the outer membrane in Escherichia coli . [More information is available at EcoCyc: G7163].
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Genomic context

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Sequence:
NC_000913.3 (2363733..2364275, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YfaX Neighboring gene IPR008135 CinA family protein YfaY Neighboring gene pyrimidine deoxynucleotide diphosphatase NudI Neighboring gene putative lipopolysaccharide core heptose(II)-phosphate phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R, et al. Protein Sci, 2003 Jun. PMID 12761386, Free PMC Article
  2. BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria. Berven FS, et al. Nucleic Acids Res, 2004 Jul 1. PMID 15215418, Free PMC Article
  3. New Escherichia coli outer membrane proteins identified through prediction and experimental verification. Marani P, et al. Protein Sci, 2006 Apr. PMID 16522795, Free PMC Article
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in cell outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cell outer membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative porin YfaZ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2363733..2364275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416753.4 putative porin YfaZ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416753.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1V2GJK6
    Conserved Domains (1) summary
    pfam07437
    Location:1 → 180
    YfaZ; YfaZ precursor
Nucleotide Protein
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