U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

elfD putative fimbrial chaperone ElfD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946773, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
elfD
Official Full Name
putative fimbrial chaperone ElfD
Primary source
ECOCYC:G6481
Locus tag
b0939
See related
ASAP:ABE-0003187
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0930; ycbR
Summary
Probable false positive lipoprotein prediction, Cys not conserved. [More information is available at EcoGene: EG13710]. YcbR is an uncharacterized protein. [More information is available at EcoCyc: G6481].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (998490..999191)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene aliphatic sulfonate ABC transporter periplasmic binding protein Neighboring gene NADPH-dependent FMN reductase Neighboring gene putative laminin-binding fimbrial subunit Neighboring gene putative fimbrial usher protein ElfC Neighboring gene putative fimbrial-like adhesin protein Neighboring gene putative fimbrial protein YcbU

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Conserved immunoglobulin-like features in a family of periplasmic pilus chaperones in bacteria. Holmgren A, et al. EMBO J, 1992 Apr. PMID 1348692, Free PMC Article
  2. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
  3. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  4. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
  5. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein folding chaperone IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
  
involved_in chaperone-mediated protein folding IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in outer membrane-bounded periplasmic space IEA
Inferred from Electronic Annotation
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
putative fimbrial chaperone ElfD

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    998490..999191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415459.1 putative fimbrial chaperone ElfD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415459.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T6QIC9
    Conserved Domains (1) summary
    COG3121
    Location:5 → 228
    FimC; P pilus assembly protein, chaperone PapD [Extracellular structures]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.