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ypdF aminopeptidase YpdF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946853, updated on 3-Dec-2024

Summary

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Official Symbol
ypdF
Official Full Name
aminopeptidase YpdF
Primary source
ECOCYC:G7248
Locus tag
b2385
See related
ASAP:ABE-0007869
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2381
Summary
YpdF has limited methionine aminopeptidase activity. [More information is available at EcoGene: EG14153]. YpdF is a metalloenzyme with aminopeptidase activity. [More information is available at EcoCyc: G7248].
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Genomic context

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Sequence:
NC_000913.3 (2505547..2506632, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative PTS multiphosphoryl transfer protein FryA Neighboring gene aminopeptidase YpdE Neighboring gene putative PTS enzyme IIC component FryC Neighboring gene putative PTS enzyme IIB component FryB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of two new aminopeptidases in Escherichia coli. Zheng Y, et al. J Bacteriol, 2005 Jun. PMID 15901689, Free PMC Article
  2. Molecular cloning, expression and characterization of three distinctive genes encoding methionine aminopeptidases in cyanobacterium Synechocystis sp. strain PCC6803. Atanassova A, et al. Arch Microbiol, 2003 Sep. PMID 12861438
  3. MEROPS: the peptidase database. Rawlings ND, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381862, Free PMC Article
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables aminopeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables aminopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables metalloaminopeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables metalloexopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables transition metal ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within proteolysis IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aminopeptidase YpdF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2505547..2506632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416886.1 aminopeptidase YpdF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416886.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376WV70, A0A8T6BM60
    Conserved Domains (1) summary
    PRK09795
    Location:1 → 361
    PRK09795; aminopeptidase; Provisional
Nucleotide Protein
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