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yfgJ zinc ribbon domain-containing protein YfgJ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946984, updated on 3-Dec-2024

Summary

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Official Symbol
yfgJ
Official Full Name
zinc ribbon domain-containing protein YfgJ
Primary source
ECOCYC:G7318
Locus tag
b2510
See related
ASAP:ABE-0008266
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2506
Summary
YfgJ is a member of DUF1407 and has 2 putative C4-type zinc fingers at positions 5-24 and 34-54. [More information is available at EcoGene: EG14206]. A yfgJ mutant has a defect in swarming, but not swimming motility . [More information is available at EcoCyc: G7318].
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Genomic context

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Sequence:
NC_000913.3 (2635599..2635814, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene GMP synthetase Neighboring gene inosine 5'-monophosphate dehydrogenase Neighboring gene exodeoxyribonuclease VII subunit XseA Neighboring gene 50S ribosomal subunit stability factor Neighboring gene outer membrane protein assembly factor BamB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide screening of genes required for swarming motility in Escherichia coli K-12. Inoue T, et al. J Bacteriol, 2007 Feb. PMID 17122336, Free PMC Article
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
zinc ribbon domain-containing protein YfgJ

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2635599..2635814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417005.2 zinc ribbon domain-containing protein YfgJ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417005.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1V2G4V8, A0A8H9VPL9
    Conserved Domains (1) summary
    pfam07191
    Location:5 → 68
    zinc-ribbons_6
Nucleotide Protein
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