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yccS putative transporter YccS [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947001, updated on 17-Dec-2024

Summary

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Official Symbol
yccS
Official Full Name
putative transporter YccS
Primary source
ECOCYC:G6495
Locus tag
b0960
See related
ASAP:ABE-0003251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0951
Summary
YccS is an inner membrane protein with nine predicted transmembrane domains. [More information is available at EcoCyc: G6495].
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Genomic context

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Sequence:
NC_000913.3 (1021730..1023883, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene outer membrane protein A Neighboring gene cell division inhibitor SulA Neighboring gene transcriptional coactivator for CRP Neighboring gene PF03733 family inner membrane protein YccF Neighboring gene DNA helicase IV

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. Zhang N, et al. Proteomics, 2007 Feb. PMID 17309111
  2. TCDB: the Transporter Classification Database for membrane transport protein analyses and information. Saier MH Jr, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381841, Free PMC Article
  3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
putative transporter YccS

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1021730..1023883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415480.2 putative transporter YccS [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415480.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0D6ZX77, A0A2A2XHF0, A0A8B3LUQ3, A0AA35AR35, A0AAN1AMT3, A0AAN1S389, A0AAV3HD60, A0AAV3I9P7
    Conserved Domains (1) summary
    TIGR01666
    Location:8 → 706
    YCCS; TIGR01666 family membrane protein
Nucleotide Protein
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