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yphF putative ABC transporter periplasmic binding protein YphF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947020, updated on 3-Dec-2024

Summary

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Official Symbol
yphF
Official Full Name
putative ABC transporter periplasmic binding protein YphF
Primary source
ECOCYC:G7342
Locus tag
b2548
See related
ASAP:ABE-0008378
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2545
Summary
Predicted yphFEDCB operon. [More information is available at EcoGene: EG13467]. YphF is a periplasmic binding component of a predicted ATP-dependent sugar transporter. [More information is available at EcoCyc: G7342].
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Genomic context

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Sequence:
NC_000913.3 (2678384..2679367, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative ABC transporter membrane subunit YphD Neighboring gene putative ABC transporter ATP-binding protein YphE Neighboring gene DUF5107 domain-containing protein YphG Neighboring gene putative DNA-binding transcriptional regulator, NAGC-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  2. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Link AJ, et al. Electrophoresis, 1997 Aug. PMID 9298646
  3. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on mature peptide
    Title: Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in transmembrane transport NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in outer membrane-bounded periplasmic space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative ABC transporter periplasmic binding protein YphF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2678384..2679367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417043.1 putative ABC transporter periplasmic binding protein YphF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417043.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9X4W0
    Conserved Domains (1) summary
    cl10011
    Location:32 → 319
    Periplasmic_Binding_Protein_type1; Type 1 periplasmic binding fold superfamily
Nucleotide Protein
Heading Accession and Version

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