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ypjD cytochrome c assembly family protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947098, updated on 3-Dec-2024

Summary

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Official Symbol
ypjD
Official Full Name
cytochrome c assembly family protein
Primary source
ECOCYC:G7355
Locus tag
b2611
See related
ASAP:ABE-0008591
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2608
Summary
The Salmonella ortholog was named as corE in Genbank AF130857. [More information is available at EcoGene: EG14226]. YpjD is an inner membrane protein with eight predicted transmembrane domains. [More information is available at EcoCyc: G7355].
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Genomic context

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Sequence:
NC_000913.3 (2747962..2748753)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal subunit protein S16 Neighboring gene signal recognition particle protein component Neighboring gene UPF0053 family inner membrane protein YfjD Neighboring gene nucleotide exchange factor GrpE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cytochrome complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cytochrome c assembly family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2747962..2748753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417102.4 cytochrome c assembly family protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417102.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A418GRW6
    Conserved Domains (1) summary
    COG4137
    Location:1 → 263
    YpjD; ABC-type uncharacterized transport system, permease component [General function prediction only]
Nucleotide Protein
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