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ygaM DUF883 domain-containing protein YgaM [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947157, updated on 17-Dec-2024

Summary

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Official Symbol
ygaM
Official Full Name
DUF883 domain-containing protein YgaM
Primary source
ECOCYC:G7400
Locus tag
b2672
See related
ASAP:ABE-0008799
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2666
Summary
ygaM is upregulated by sodium salicylate, which is also known to cause the induction of the marRAB regulon resulting in resistance to oxidative agents and antibiotics . ygaM was also shown to be induced at the transition to stationary phase, upon NaCl shock, and upon acid shock in a rpoS+ strain compared to a rpoS mutant, and is therefore believed to be controlled by the general stress response master regulator, S . ygaM was shown to cluster with osmoprotectant genes having supercoiling-dependent transcription . ygaM is among the 25 genes most susceptible to phage insertion at mid-log phase growth, which was shown to prefer regions of low transcription . [More information is available at EcoCyc: G7400].
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Genomic context

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Sequence:
NC_000913.3 (2800146..2800475)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-alanine exporter Neighboring gene DUF2002 domain-containing protein YgaC Neighboring gene glutaredoxin-like protein NrdH Neighboring gene dimanganese-tyrosyl radical cofactor maintenance flavodoxin NrdI Neighboring gene ribonucleoside-diphosphate reductase 2 subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Microarray analysis of transposition targets in Escherichia coli: the impact of transcription. Manna D, et al. Proc Natl Acad Sci U S A, 2004 Jun 29. PMID 15210965, Free PMC Article
  2. A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli. Cheung KJ, et al. Genome Res, 2003 Feb. PMID 12566398, Free PMC Article
  3. Genome-wide transcriptional profiling of the Escherichia coli responses to superoxide stress and sodium salicylate. Pomposiello PJ, et al. J Bacteriol, 2001 Jul. PMID 11395452, Free PMC Article
  4. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. Weber H, et al. J Bacteriol, 2005 Mar. PMID 15716429, Free PMC Article
  5. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 

General protein information

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Preferred Names
DUF883 domain-containing protein YgaM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2800146..2800475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417158.4 DUF883 domain-containing protein YgaM [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417158.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1MT32
    Conserved Domains (1) summary
    PRK10132
    Location:1 → 108
    PRK10132; hypothetical protein; Provisional
Nucleotide Protein
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