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intD putative integrase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947162, updated on 17-Dec-2024

Summary

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Official Symbol
intD
Official Full Name
putative integrase
Primary source
ECOCYC:EG10507
Locus tag
b0537
See related
ASAP:ABE-0001842
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0530; int
Summary
IntD is the predicted integrase of the cryptic lambdoid prophage DLP12 . intD can be transcribed in vivo. [More information is available at EcoCyc: EG10507].
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Genomic context

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Sequence:
NC_000913.3 (564815..565978, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative LuxR family transcriptional regulator FimZ Neighboring gene tRNA-Arg Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the cryptic lambdoid prophage DLP12 of Escherichia coli and overlap of the DLP12 integrase gene with the tRNA gene argU. Lindsey DF, et al. J Bacteriol, 1989 Nov. PMID 2553674, Free PMC Article
  2. Nucleotide sequence of the region encompassing the int gene of a cryptic prophage and the dna Y gene flanked by a curved DNA sequence of Escherichia coli K12. Muramatsu S, et al. Mol Gen Genet, 1990 Jan. PMID 2183007
  3. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  4. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables prophage integrase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables site-specific recombinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA recombination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in establishment of integrated proviral latency IEA
Inferred from Electronic Annotation
more info
  
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
  
involved_in viral genome integration into host DNA IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative integrase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    564815..565978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415069.1 putative integrase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415069.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X3M322
    Conserved Domains (1) summary
    cd00796
    Location:182 → 351
    INT_Rci_Hp1_C; Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain
Nucleotide Protein
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