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ygeV putative sigma(54)-dependent transcriptional regulator YgeV [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947320, updated on 3-Dec-2024

Summary

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Official Symbol
ygeV
Official Full Name
putative sigma(54)-dependent transcriptional regulator YgeV
Primary source
ECOCYC:G7488
Locus tag
b2869
See related
ASAP:ABE-0009420
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2865
Summary
AFMB Structural Genomics target Number 60 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG13052]. Regulation has been described . [More information is available at EcoCyc: G7488].
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Genomic context

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Sequence:
NC_000913.3 (3004008..3005786, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative xanthine dehydrogenase molybdenum-binding subunit XdhA Neighboring gene putative xanthine dehydrogenase FAD-binding subunit XdhB Neighboring gene putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC Neighboring gene putative carbamoyltransferase YgeW Neighboring gene 2,3-diaminopropionate ammonia-lyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DNA microarray-based identification of genes controlled by autoinducer 2-stimulated quorum sensing in Escherichia coli. DeLisa MP, et al. J Bacteriol, 2001 Sep. PMID 11514505, Free PMC Article
  2. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. Pérez-Rueda E, et al. Nucleic Acids Res, 2000 Apr 15. PMID 10734204, Free PMC Article
  3. Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage. Xi H, et al. J Bacteriol, 2000 Oct. PMID 10986234, Free PMC Article
  4. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  5. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
putative sigma(54)-dependent transcriptional regulator YgeV

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3004008..3005786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417345.1 putative sigma(54)-dependent transcriptional regulator YgeV [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417345.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FUH4
    Conserved Domains (1) summary
    COG3829
    Location:18 → 589
    RocR; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]
Nucleotide Protein
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