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intF putative phage integrase [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947351, updated on 17-Dec-2024

Summary

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Official Symbol
intF
Official Full Name
putative phage integrase
Primary source
ECOCYC:G6152
Locus tag
b0281
See related
ASAP:ABE-0000979
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0280; yagO
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Genomic context

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Sequence:
NC_000913.3 (295696..297096, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YagM Neighboring gene protein YkgV Neighboring gene protein YagN Neighboring gene putative LysR family substrate binding domain-containing protein YagP Neighboring gene molybdenum cofactor insertion chaperone PaoD Neighboring gene aldehyde dehydrogenase: molybdenum cofactor-binding subunit Neighboring gene aldehyde dehydrogenase, FAD-binding subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables prophage integrase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
  
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
  
involved_in establishment of integrated proviral latency IEA
Inferred from Electronic Annotation
more info
  
involved_in provirus excision IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within response to X-ray IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
  
involved_in viral genome integration into host DNA IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative phage integrase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    295696..297096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414815.1 putative phage integrase [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414815.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AAW9X944
    Conserved Domains (2) summary
    pfam13356
    Location:65 → 113
    Arm-DNA-bind_3; Arm DNA-binding domain
    cl00213
    Location:276 → 447
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
Nucleotide Protein
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