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yphA putative inner membrane protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947365, updated on 3-Dec-2024

Summary

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Official Symbol
yphA
Official Full Name
putative inner membrane protein
Primary source
ECOCYC:G7337
Locus tag
b2543
See related
ASAP:ABE-0008365
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2540
Summary
YphA and YqjF are paralogs. [More information is available at EcoGene: EG13462]. YphA is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G7337].
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Genomic context

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Sequence:
NC_000913.3 (2673346..2673768)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin subunit Neighboring gene 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit Neighboring gene putative aldose 1-epimerase YphB Neighboring gene putative zinc-binding dehydrogenase YphC

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the hca cluster encoding the dioxygenolytic pathway for initial catabolism of 3-phenylpropionic acid in Escherichia coli K-12. Díaz E, et al. J Bacteriol, 1998 Jun. PMID 9603882, Free PMC Article
  2. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  3. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative inner membrane protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    2673346..2673768
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417038.4 putative inner membrane protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417038.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2VC07
    Conserved Domains (1) summary
    COG2259
    Location:5 → 140
    DoxX; Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]
Nucleotide Protein
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