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yggE DUF541 domain-containing protein YggE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947398, updated on 3-Dec-2024

Summary

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Official Symbol
yggE
Official Full Name
DUF541 domain-containing protein YggE
Primary source
ECOCYC:EG11244
Locus tag
b2922
See related
ASAP:ABE-0009588
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK2918
Summary
Expression of yggE is upregulated in a superoxide dismutase-deficient strain that is exposed to oxidative stress and by UVA irradiation and elevated temperature . [More information is available at EcoCyc: EG11244].
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Genomic context

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Sequence:
NC_000913.3 (3067340..3068080, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene methylmalonyl-CoA decarboxylase Neighboring gene propionyl-CoA:succinate CoA transferase Neighboring gene putative DNA-binding transcriptional regulator YgfI Neighboring gene L-arginine exporter Neighboring gene small conductance mechanosensitive channel MscS

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of the yggE gene protects Escherichia coli from potassium tellurite-generated oxidative stress. Acuña LG, et al. Arch Microbiol, 2009 May. PMID 19330318
  2. Functionally undefined gene, yggE, alleviates oxidative stress generated by monoamine oxidase in recombinant Escherichia coli. Ojima Y, et al. Biotechnol Lett, 2009 Jan. PMID 18800193
  3. The gene yggE functions in restoring physiological defects of Escherichia coli cultivated under oxidative stress conditions. Kim SY, et al. Appl Environ Microbiol, 2005 May. PMID 15870370, Free PMC Article
  4. Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli. Alefounder PR, et al. Mol Microbiol, 1989 Jun. PMID 2546007
  5. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences. Lacour S, et al. J Bacteriol, 2004 Nov. PMID 15489429, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to reactive oxygen species IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to reactive oxygen species IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
DUF541 domain-containing protein YggE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3067340..3068080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417397.1 DUF541 domain-containing protein YggE [Escherichia coli str. K-12 substr. MG1655]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A895NUI5
    Conserved Domains (1) summary
    PRK11087
    Location:8 → 234
    PRK11087; oxidative stress defense protein; Provisional
Nucleotide Protein
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