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ydcC H repeat-associated putative transposase YdcC [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947435, updated on 3-Dec-2024

Summary

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Official Symbol
ydcC
Official Full Name
H repeat-associated putative transposase YdcC
Primary source
ECOCYC:EG11526
Locus tag
b1460
See related
ASAP:ABE-0004872
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1454
Summary
Downregulated twofold by GSNO in defined medium (aerobic). [More information is available at EcoGene: EG11526].
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Genomic context

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Sequence:
NC_000913.3 (1531816..1532952)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YdcD Neighboring gene protein YncO Neighboring gene pseudo Neighboring gene tautomerase PptA Neighboring gene flavin reductase-like protein YddH Neighboring gene arylamine N-acetyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement. Jackson AP, et al. BMC Genomics, 2009 Dec 7. PMID 19968874, Free PMC Article
  2. Rhs elements of Escherichia coli K-12: complex composites of shared and unique components that have different evolutionary histories. Zhao S, et al. J Bacteriol, 1993 May. PMID 8387990, Free PMC Article
  3. Transcriptional responses of Escherichia coli to S-nitrosoglutathione under defined chemostat conditions reveal major changes in methionine biosynthesis. Flatley J, et al. J Biol Chem, 2005 Mar 18. PMID 15647275
  4. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
  5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transposase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA transposition IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
H repeat-associated putative transposase YdcC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1531816..1532952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415977.1 H repeat-associated putative transposase YdcC [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415977.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6M9WQR5
    Conserved Domains (2) summary
    COG5433
    Location:317 → 378
    YhhI; Predicted transposase YbfD/YdcC associated with H repeats [Mobilome: prophages, transposons]
    NF033564
    Location:29 → 344
    transpos_ISAs1; ISAs1 family transposase
Nucleotide Protein
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