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ubiK ubiquinone biosynthesis accessory factor UbiK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947524, updated on 3-Dec-2024

Summary

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Official Symbol
ubiK
Official Full Name
ubiquinone biosynthesis accessory factor UbiK
Primary source
ECOCYC:G7582
Locus tag
b3042
See related
ASAP:ABE-0009987
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3033; yqiC
Summary
The protein has been detected, and similarity to proteins in other organisms is discussed . [More information is available at EcoCyc: G7582].
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Genomic context

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Sequence:
NC_000913.3 (3184840..3185130)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YqiD Neighboring gene 3,4-dihydroxy-2-butanone-4-phosphate synthase Neighboring gene putative fimbrial protein YgiL Neighboring gene pseudo Neighboring gene IS2 insertion element repressor InsA Neighboring gene IS2 insertion element protein InsB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Reliable identification of protein-protein interactions by crosslinking mass spectrometry. Lenz S, et al. Nat Commun, 2021 Jun 11. PMID 34117231, Free PMC Article
  2. A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone. Hajj Chehade M, et al. Cell Chem Biol, 2019 Apr 18. PMID 30686758
  3. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
  4. The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ. Loiseau L, et al. J Biol Chem, 2017 Jul 14. PMID 28559279, Free PMC Article
  5. Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth. Lopez-Campistrous A, et al. Mol Cell Proteomics, 2005 Aug. PMID 15911532

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: Small genes/gene-products in Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in ubiquinone biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquinone biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
part_of ubiquinone biosynthesis complex IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
ubiquinone biosynthesis accessory factor UbiK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3184840..3185130
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417514.4 ubiquinone biosynthesis accessory factor UbiK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417514.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8T5Z9I9
    Conserved Domains (1) summary
    COG2960
    Location:1 → 94
    YqiC; Uncharacterized conserved protein YqiC, BMFP domain [Function unknown]
Nucleotide Protein
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