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rrrD lysozyme [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947539, updated on 3-Dec-2024

Summary

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Official Symbol
rrrD
Official Full Name
lysozyme
Primary source
ECOCYC:G6310
Locus tag
b0555
See related
ASAP:ABE-0001898
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0546; lycV; ybcS
Summary
ArrD(YbcS) and ArrQ(YdfQ) are distant homologs of the phage lambda lysozyme R protein, as evidenced by all three matching to the pfam00959 profile (E values for pfam00959 hits using NCBI Conserved Domain (CD) Search: [More information is available at EcoGene: EG13635]. YbcS is an endolysin encoded by the cryptic lambdoid prophage DLP12 . [More information is available at EcoCyc: G6310].
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Genomic context

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Sequence:
NC_000913.3 (577613..578110)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene prophage antitermination protein Q homolog QuuD Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene putative phage lysis protein Neighboring gene putative prophage endopeptidase RzpD Neighboring gene putative prophage lysis lipoprotein RzoD Neighboring gene prophage lipoprotein BorD

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subclassification and targeted characterization of prophage-encoded two-component cell lysis cassette. Srividhya KV, et al. J Biosci, 2007 Aug. PMID 17914239
  2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
  3. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
enables lysozyme activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables lysozyme activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
  
involved_in killing of cells of another organism IEA
Inferred from Electronic Annotation
more info
  
involved_in peptidoglycan catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within viral release from host cell by cytolysis IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
lysozyme
NP_415087.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    577613..578110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_415087.1 lysozyme [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_415087.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A828N646
    Conserved Domains (1) summary
    cd16900
    Location:23 → 161
    endolysin_R21-like; endolysin R21-like proteins
Nucleotide Protein
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