U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ygjR putative oxidoreductase YgjR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947600, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
ygjR
Official Full Name
putative oxidoreductase YgjR
Primary source
ECOCYC:G7606
Locus tag
b3087
See related
ASAP:ABE-0010148
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3077
Summary
AFMB Structural Genomics target Number 75 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12729].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (3237311..3238297)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative metal-dependent hydrolase Neighboring gene DUF218 domain-containing protein YgjQ Neighboring gene putative membrane-bound redox modulator Alx Neighboring gene serine/threonine:Na(+) symporter

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  2. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
putative oxidoreductase YgjR

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3237311..3238297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417558.2 putative oxidoreductase YgjR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417558.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7H9S8F0, A0A8S7JXR9
    Conserved Domains (1) summary
    COG0673
    Location:1 → 328
    MviM; Predicted dehydrogenase [General function prediction only]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.