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yqjF DoxX family protein [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947608, updated on 3-Dec-2024

Summary

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Official Symbol
yqjF
Official Full Name
DoxX family protein
Primary source
ECOCYC:G7615
Locus tag
b3101
See related
ASAP:ABE-0010200
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3092
Summary
YphA and YqjF are paralogs. [More information is available at EcoGene: EG12745]. YqjF is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G7615].
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Genomic context

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Sequence:
NC_000913.3 (3250562..3250954)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene ribosome- and membrane-associated DUF883 domain-containing protein YqjD Neighboring gene inner membrane protein YqjE Neighboring gene PF13997 family protein YqjK Neighboring gene glutathionyl-hydroquinone reductase YqjG Neighboring gene putative inner membrane protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  2. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
  3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DoxX family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3250562..3250954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417572.2 DoxX family protein [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417572.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0AA36L0S8, Q1R6M9
    Conserved Domains (1) summary
    COG2259
    Location:1 → 130
    DoxX; Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]
Nucleotide Protein
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