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yqjD ribosome- and membrane-associated DUF883 domain-containing protein YqjD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947614, updated on 3-Dec-2024

Summary

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Official Symbol
yqjD
Official Full Name
ribosome- and membrane-associated DUF883 domain-containing protein YqjD
Primary source
ECOCYC:G7612
Locus tag
b3098
See related
ASAP:ABE-0010192
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3089
Summary
May be ribosome associated (Jiang, 2007). [More information is available at EcoGene: EG12743]. A yqjD mutant shows increased biofilm formation compared to wild type, but decreased biofilm formation when the derepressed conjugative plasmid R1drd19 is present . [More information is available at EcoCyc: G7612].
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Genomic context

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Sequence:
NC_000913.3 (3249375..3249680)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene modulator protein MzrA Neighboring gene DUF1090 domain-containing protein YqjC Neighboring gene inner membrane protein YqjE Neighboring gene PF13997 family protein YqjK Neighboring gene DoxX family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. YqjD is an inner membrane protein associated with stationary-phase ribosomes in Escherichia coli. Yoshida H, et al. J Bacteriol, 2012 Aug. PMID 22661687, Free PMC Article
  2. The R1 conjugative plasmid increases Escherichia coli biofilm formation through an envelope stress response. Yang X, et al. Appl Environ Microbiol, 2008 May. PMID 18344336, Free PMC Article
  3. Isolation and identification of new inner membrane-associated proteins that localize to cell poles in Escherichia coli. Li G, et al. Mol Microbiol, 2012 Apr. PMID 22380631
  4. Cross-linking measurements of in vivo protein complex topologies. Zheng C, et al. Mol Cell Proteomics, 2011 Oct. PMID 21697552, Free PMC Article
  5. A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis. Lasserre JP, et al. Electrophoresis, 2006 Aug. PMID 16858726

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ribosomal small subunit binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell pole IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosome- and membrane-associated DUF883 domain-containing protein YqjD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3249375..3249680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417569.1 ribosome- and membrane-associated DUF883 domain-containing protein YqjD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417569.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6C9QAH3
    Conserved Domains (1) summary
    COG4575
    Location:1 → 101
    ElaB; Membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, ElaB/YqjD/DUF883 family [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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