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yraK putative fimbrial adhesin YraK [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947654, updated on 3-Dec-2024

Summary

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Official Symbol
yraK
Official Full Name
putative fimbrial adhesin YraK
Primary source
ECOCYC:G7640
Locus tag
b3145
See related
ASAP:ABE-0010335
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3133
Summary
One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG12776]. YraK is a hypothetical protein. [More information is available at EcoCyc: G7640].
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Genomic context

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Sequence:
NC_000913.3 (3291341..3292432)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial chaperone YraI Neighboring gene putative fimbrial usher protein YraJ Neighboring gene 16S rRNA 2'-O-ribose C1402 methyltransferase Neighboring gene outer membrane lipoprotein - activator of MrcA activity Neighboring gene PF02021 family protein YraN

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Korea CG, et al. Environ Microbiol, 2010 Jul. PMID 20345943
  2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in cell adhesion involved in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within cell adhesion involved in single-species biofilm formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in pilus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in pilus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative fimbrial adhesin YraK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3291341..3292432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417614.1 putative fimbrial adhesin YraK [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417614.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376WVW5, A0A7H9N5D7
    Conserved Domains (2) summary
    PRK15297
    Location:22 → 363
    PRK15297; fimbrial protein
    pfam00419
    Location:210 → 363
    Fimbrial; Fimbrial protein
Nucleotide Protein
Heading Accession and Version

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