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yhbQ DNA damage response nuclease YhbQ [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947671, updated on 3-Dec-2024

Summary

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Official Symbol
yhbQ
Official Full Name
DNA damage response nuclease YhbQ
Primary source
ECOCYC:G7649
Locus tag
b3155
See related
ASAP:ABE-0010370
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3143
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Genomic context

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Sequence:
NC_000913.3 (3299966..3300268)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative nucleoside-diphosphate-sugar epimerase Neighboring gene protein/nucleic acid deglycase 2 Neighboring gene putative FMN binding protein YhbP Neighboring gene putative N-acetyltransferase YhbS Neighboring gene anaerobic ubiquinone biosynthesis accessory factor UbiT Neighboring gene ubiquinone biosynthesis protein UbiU

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli. Kumar A, et al. Cell Rep, 2016 Jan 26. PMID 26774489
  2. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 3'-5'-DNA exonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA endonuclease activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response EXP
Inferred from Experiment
more info
 PubMed 
involved_in DNA metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA damage response nuclease YhbQ
NP_417624.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3299966..3300268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417624.1 DNA damage response nuclease YhbQ [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417624.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0FLV9
    Conserved Domains (1) summary
    PRK00329
    Location:1 → 82
    PRK00329; GIY-YIG nuclease superfamily protein; Validated
Nucleotide Protein
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