U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

yahD ankyrin repeat-containing protein YahD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947681, updated on 17-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
yahD
Official Full Name
ankyrin repeat-containing protein YahD
Primary source
ECOCYC:G6183
Locus tag
b0318
See related
ASAP:ABE-0001095
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK0316
Summary
YahD shows some similarity to human RNase L due to the presence of ankyrin repeats with conserved GKT motifs . [More information is available at EcoCyc: G6183].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (335280..335885)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative LysR-type DNA-binding transcriptional regulator YahB Neighboring gene uncharacterized protein YahC Neighboring gene DUF2877 domain-containing protein YahE Neighboring gene putative acyl-CoA synthetase YahF Neighboring gene DUF1116 domain-containing protein YahG

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression of interferon-inducible recombinant human RNase L causes RNA degradation and inhibition of cell growth in Escherichia coli. Pandey M, et al. Biochem Biophys Res Commun, 2004 Apr 30. PMID 15063798
  2. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Twiss E, et al. Mol Microbiol, 2005 Sep. PMID 16135227
  3. Screen for genes involved in radiation survival of Escherichia coli and construction of a reference database. Sargentini NJ, et al. Mutat Res, 2016 Nov-Dec. PMID 27718375
  4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within response to radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat-containing protein YahD

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    335280..335885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_414852.1 ankyrin repeat-containing protein YahD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_414852.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2X1KFI3
    Conserved Domains (3) summary
    COG0666
    Location:4 → 146
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:108 → 136
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:112 → 201
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.