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yhcF DUF1120 domain-containing protein YhcF [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947735, updated on 3-Dec-2024

Summary

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Official Symbol
yhcF
Official Full Name
DUF1120 domain-containing protein YhcF
Primary source
ECOCYC:G7673
Locus tag
b3219
See related
ASAP:ABE-0010564
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3208
Summary
First 20 aa are predicted to be a type I signal peptide. [More information is available at EcoGene: EG12812]. YhcF is a hypothetical protein. [More information is available at EcoCyc: G7673].
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Genomic context

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Sequence:
NC_000913.3 (3366926..3367642)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial usher protein YhcD Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator Neighboring gene DUF1016 domain-containing protein YhcG Neighboring gene N-acetylneuraminate anomerase Neighboring gene N-acetylmannosamine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article
  2. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y, et al. Protein Sci, 2002 Sep. PMID 12192075, Free PMC Article
  3. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
  4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
DUF1120 domain-containing protein YhcF

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3366926..3367642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417686.1 DUF1120 domain-containing protein YhcF [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417686.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P45422
    Conserved Domains (1) summary
    pfam06551
    Location:28 → 138
    DUF1120; Protein of unknown function (DUF1120)
Nucleotide Protein
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