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yhdE nucleoside triphosphate pyrophosphatase YhdE [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947753, updated on 3-Dec-2024

Summary

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Official Symbol
yhdE
Official Full Name
nucleoside triphosphate pyrophosphatase YhdE
Primary source
ECOCYC:EG11298
Locus tag
b3248
See related
ASAP:ABE-0010653
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3236
Summary
Maf is a nucleotide-binding protein implicated in inhibition of septum formation in B. subtilis. [More information is available at EcoGene: EG11298].
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Genomic context

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Sequence:
NC_000913.3 (3397785..3398378, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene metalloprotease subunit TldD Neighboring gene phospholipid transport factor YhdP Neighboring gene RNase G Neighboring gene cell shape determining protein MreD Neighboring gene cell shape determining protein MreC Neighboring gene dynamic cytoskeletal protein MreB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP. Minasov G, et al. Proc Natl Acad Sci U S A, 2000 Jun 6. PMID 10841541, Free PMC Article
  2. Sequence of the downstream flanking region of the shape-determining genes mreBCD of Escherichia coli. Wachi M, et al. Gene, 1991 Sep 30. PMID 1937035
  3. A new method to investigate the catalytic mechanism of YhdE pyrophosphatase by using a pyrophosphate fluorescence probe. Shen Q, et al. Sci Rep, 2017 Aug 15. PMID 28811554, Free PMC Article
  4. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
  5. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables 8-oxo-(d)RTP hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables UTP diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables UTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables dTTP diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables dTTP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables manganese ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleoside triphosphate diphosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleoside triphosphate diphosphatase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein homodimerization activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pyrophosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in nucleotide metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
nucleoside triphosphate pyrophosphatase YhdE

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3397785..3398378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417714.1 nucleoside triphosphate pyrophosphatase YhdE [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417714.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H4TUB4, A0A478LDG5
    Conserved Domains (1) summary
    PRK00032
    Location:1 → 190
    PRK00032; septum formation inhibitor Maf
Nucleotide Protein
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