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yrdB DUF1488 domain-containing protein YrdB [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947774, updated on 17-Dec-2024

Summary

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Official Symbol
yrdB
Official Full Name
DUF1488 domain-containing protein YrdB
Primary source
ECOCYC:G7697
Locus tag
b3280
See related
ASAP:ABE-0010761
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3267
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Genomic context

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Sequence:
NC_000913.3 (3429766..3430023, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene 16S ribosomal RNA Neighboring gene hexapeptide repeat-containing protein YrdA Neighboring gene shikimate dehydrogenase Neighboring gene L-threonylcarbamoyladenylate synthase Neighboring gene putative DNA topoisomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequences that direct significant levels of frameshifting are frequent in coding regions of Escherichia coli. Gurvich OL, et al. EMBO J, 2003 Nov 3. PMID 14592990, Free PMC Article
  2. The YrdC protein--a putative ribosome maturation factor. Kaczanowska M, et al. Biochim Biophys Acta, 2005 Feb 14. PMID 15716138
  3. Temperature sensitivity caused by mutant release factor 1 is suppressed by mutations that affect 16S rRNA maturation. Kaczanowska M, et al. J Bacteriol, 2004 May. PMID 15126466, Free PMC Article
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
DUF1488 domain-containing protein YrdB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3429766..3430023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417739.1 DUF1488 domain-containing protein YrdB [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417739.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8S0FJU6
    Conserved Domains (1) summary
    pfam07369
    Location:5 → 84
    DUF1488; Protein of unknown function (DUF1488)
Nucleotide Protein
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