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rplM 50S ribosomal subunit protein L13 [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947828, updated on 3-Dec-2024

Summary

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Official Symbol
rplM
Official Full Name
50S ribosomal subunit protein L13
Primary source
ECOCYC:EG10874
Locus tag
b3231
See related
ASAP:ABE-0010599
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3220
Summary
The L13 protein is an early assembly component of the 50S subunit of the ribosome. [More information is available at EcoCyc: EG10874].
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Genomic context

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Sequence:
NC_000913.3 (3378223..3378651, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene stringent starvation protein A Neighboring gene 30S ribosomal subunit protein S9 Neighboring gene cell division protein ZapE Neighboring gene Z-ring associated protein G

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The synthesis of a photoreactive puromycin analogue and its application for labeling proteins in the 50-S subunit of Escherichia coli ribosomes. Krassnigg F, et al. Eur J Biochem, 1978 Jul 3. PMID 354931
  2. Pervasive Regulatory Functions of mRNA Structure Revealed by High-Resolution SHAPE Probing. Mustoe AM, et al. Cell, 2018 Mar 22. PMID 29551268, Free PMC Article
  3. The gene for ribosomal protein L13, rplM, is located near argR, at about 70 minutes on the Escherichia coli chromosomal linkage map. Dabbs ER. J Bacteriol, 1982 Feb. PMID 7035437, Free PMC Article
  4. Photo-induced labelling of Escherichia coli ribosomes by a tobramycin analog. Tangy F, et al. Eur J Biochem, 1983 Apr 5. PMID 6341055
  5. Photoaffinity labeling of the pactamycin binding site on eubacterial ribosomes. Tejedor F, et al. Biochemistry, 1985 Jul 2. PMID 3899171

See all (50) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables large ribosomal subunit rRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA 5'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within negative regulation of translation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic large ribosomal subunit IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
is_active_in ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
50S ribosomal subunit protein L13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3378223..3378651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417698.1 50S ribosomal subunit protein L13 [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417698.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5C9ANX6
    Conserved Domains (1) summary
    PRK09216
    Location:1 → 142
    rplM; 50S ribosomal protein L13; Reviewed
Nucleotide Protein
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Gene LinkOut

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