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yhcN DUF1471 domain-containing stress-induced protein YhcN [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947835, updated on 17-Dec-2024

Summary

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Official Symbol
yhcN
Official Full Name
DUF1471 domain-containing stress-induced protein YhcN
Primary source
ECOCYC:G7683
Locus tag
b3238
See related
ASAP:ABE-0010623
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3227
Summary
22 aa signal peptide cleavage and periplasmic localization of YhcN have been experimentally verified, Mitchell, R., Del Campo, M., Hus, N. and Rudd, K.E., unpublished results. [More information is available at EcoGene: EG12820].
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Genomic context

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Sequence:
NC_000913.3 (3385538..3385801)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene malate dehydrogenase Neighboring gene DNA-binding transcriptional dual regulator ArgR Neighboring gene putative barnase inhibitor Neighboring gene aromatic carboxylic acid efflux pump subunit AaeB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EcoGene: a genome sequence database for Escherichia coli K-12. Rudd KE. Nucleic Acids Res, 2000 Jan 1. PMID 10592181, Free PMC Article
  2. Rapid acid treatment of Escherichia coli: transcriptomic response and recovery. Kannan G, et al. BMC Microbiol, 2008 Feb 26. PMID 18302792, Free PMC Article
  3. Low molecular weight proteins: a challenge for post-genomic research. Rudd KE, et al. Electrophoresis, 1998 Apr. PMID 9588799
  4. Escherichia coli gene expression responsive to levels of the response regulator EvgA. Masuda N, et al. J Bacteriol, 2002 Nov. PMID 12399493, Free PMC Article
  5. Identification of stress-related proteins in Escherichia coli using the pollutant cis-dichloroethylene. Lee J, et al. J Appl Microbiol, 2010 Jun. PMID 19919618

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to acidic pH IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within cellular response to hydrogen peroxide IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within single-species biofilm formation on inanimate substrate IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in periplasmic space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DUF1471 domain-containing stress-induced protein YhcN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3385538..3385801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417705.2 DUF1471 domain-containing stress-induced protein YhcN [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417705.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H2Z343, A0A0H3EM47, A0A0H3JKM0, A0A192CC68, A0A1X3I3B3, A0A1X3IXR2, A0A1X3JCL2, A0A829L5B4, A0AA36L0S4, A0AAN4SWS9, C3SRU2, F4T3W8, Q1R6A1
    Conserved Domains (1) summary
    NF033776
    Location:1 → 87
    stress_YhcN; peroxide/acid stress response protein YhcN
Nucleotide Protein
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